Index

Symbols

--dicomdir command line option --diffusion-scheme command line option --dtype command line option --effective-b-values command line option --image command line option --json command line option --layout command line option, [1] --match command line option --multiframe command line option --pipe command line option --transfer-syntax command line option --verbose command line option, [1], [2], [3], [4] --zip command line option

-d command line option, [1] -e command line option -i command line option -j command line option -l command line option, [1] -m command line option, [1] -p command line option -s command line option -t command line option -v command line option, [1], [2], [3], [4] -z command line option [destination command line option

C

command line option --dicomdir --diffusion-scheme --dtype --effective-b-values --image --json --layout, [1] --match --multiframe --pipe --transfer-syntax --verbose, [1], [2], [3], [4] --zip -d, [1] -e -i -j -l, [1] -m, [1] -p -s -t -v, [1], [2], [3], [4] -z [destination destination, [1] format source, [1], [2], [3], [4]

convert_data_set() (in module dicomifier.dicom_to_nifti.meta_data) convert_directory() (in module dicomifier.bruker_to_dicom.convert) convert_element() (in module dicomifier.bruker_to_dicom.convert) (in module dicomifier.dicom_to_nifti.meta_data) convert_module() (in module dicomifier.bruker_to_dicom.convert) convert_paths() (in module dicomifier.dicom_to_nifti.convert) convert_reconstruction() (in module dicomifier.bruker_to_dicom.convert) convert_series() (in module dicomifier.dicom_to_nifti.convert) convert_series_data_sets() (in module dicomifier.dicom_to_nifti.convert) create_dicomdir() (in module dicomifier.bruker_to_dicom.io)

D

Dataset (class in dicomifier.bruker) DefaultSeriesFinder (class in dicomifier.dicom_to_nifti.series) dependent_fields (dicomifier.bruker_to_dicom.FrameIndexGenerator property) destination command line option, [1] dicomifier.bruker module dicomifier.bruker_to_dicom.convert module dicomifier.bruker_to_dicom.io module dicomifier.dicom_to_nifti.convert module

dicomifier.dicom_to_nifti.image module dicomifier.dicom_to_nifti.io module dicomifier.dicom_to_nifti.meta_data module dicomifier.dicom_to_nifti.series module dicomifier.dicom_to_nifti.siemens module dicomifier.dicom_to_nifti.stacks module dicomifier.nifti.diffusion module

E

enhanced_mr_image_storage() (in module dicomifier.bruker_to_dicom.iods)

F

Field (class in dicomifier.bruker) Field.Item (class in dicomifier.bruker) filter() (dicomifier.bruker_to_dicom.convert.ReconstructionContext method) (dicomifier.dicom_to_nifti.convert.SeriesContext method) find_element() (in module dicomifier.dicom_to_nifti.image) format command line option

frame_group_index_getter() (in module dicomifier.dicom_to_nifti.stacks) frame_groups (dicomifier.bruker_to_dicom.FrameIndexGenerator property) FrameIndexGenerator (class in dicomifier.bruker_to_dicom) frames_count (dicomifier.bruker_to_dicom.FrameIndexGenerator property) from_ge_private() (in module dicomifier.nifti.diffusion) from_siemens_csa() (in module dicomifier.nifti.diffusion) from_standard() (in module dicomifier.nifti.diffusion)

G

ge_complex_image_component_getter() (in module dicomifier.dicom_to_nifti.stacks) ge_diffusion_getter() (in module dicomifier.dicom_to_nifti.stacks) get_bruker_info() (in module dicomifier.bruker_to_dicom.io) get_dicomdir_files() (in module dicomifier.dicom_to_nifti.io) get_diffusion() (in module dicomifier.dicom_to_nifti.stacks) get_dimension_index() (in module dicomifier.dicom_to_nifti.stacks) get_field() (dicomifier.bruker.Dataset method) get_files() (in module dicomifier.dicom_to_nifti.io) get_frame_position() (in module dicomifier.dicom_to_nifti.stacks) get_geometry() (in module dicomifier.dicom_to_nifti.image) get_image() (in module dicomifier.dicom_to_nifti.image) get_in_stack_position_index() (in module dicomifier.dicom_to_nifti.stacks) get_int() (dicomifier.bruker.Field method) (dicomifier.bruker.Field.Item method) get_linear_index() (dicomifier.bruker_to_dicom.FrameIndexGenerator method)

get_linear_pixel_data() (in module dicomifier.dicom_to_nifti.image) get_meta_data() (in module dicomifier.dicom_to_nifti.meta_data) get_orientation() (in module dicomifier.dicom_to_nifti.image) get_origin() (in module dicomifier.dicom_to_nifti.image) get_real() (dicomifier.bruker.Field method) (dicomifier.bruker.Field.Item method) get_series_directory() (in module dicomifier.dicom_to_nifti.io) get_shaped_pixel_data() (in module dicomifier.dicom_to_nifti.image) get_spacing() (in module dicomifier.dicom_to_nifti.image) get_stacks() (in module dicomifier.dicom_to_nifti.stacks) get_string() (dicomifier.bruker.Field method) (dicomifier.bruker.Field.Item method) get_struct() (dicomifier.bruker.Field method) (dicomifier.bruker.Field.Item method) get_tag_name() (in module dicomifier.dicom_to_nifti.meta_data) get_used_files() (dicomifier.bruker.Dataset method)

H

has_field() (dicomifier.bruker.Dataset method)

I

is_int() (dicomifier.bruker.Field method) (dicomifier.bruker.Field.Item method) is_real() (dicomifier.bruker.Field method) (dicomifier.bruker.Field.Item method)

is_string() (dicomifier.bruker.Field method) (dicomifier.bruker.Field.Item method) is_struct() (dicomifier.bruker.Field method) (dicomifier.bruker.Field.Item method) items() (dicomifier.bruker.Dataset method)

L

load() (dicomifier.bruker.Dataset method)

M

merge_images_and_meta_data() (in module dicomifier.dicom_to_nifti.convert) module dicomifier.bruker dicomifier.bruker_to_dicom.convert dicomifier.bruker_to_dicom.io dicomifier.dicom_to_nifti.convert dicomifier.dicom_to_nifti.image dicomifier.dicom_to_nifti.io dicomifier.dicom_to_nifti.meta_data dicomifier.dicom_to_nifti.series dicomifier.dicom_to_nifti.siemens dicomifier.dicom_to_nifti.stacks dicomifier.nifti.diffusion

mr_image_storage() (in module dicomifier.bruker_to_dicom.iods)

N

name (dicomifier.bruker.Field property)

O

OrientationGetter (class in dicomifier.dicom_to_nifti.stacks)

orientations (dicomifier.dicom_to_nifti.stacks.OrientationGetter property)

P

parse_ascconv() (in module dicomifier.dicom_to_nifti.siemens) parse_csa() (in module dicomifier.dicom_to_nifti.siemens)

parse_element() (in module dicomifier.dicom_to_nifti.siemens) parse_item() (in module dicomifier.dicom_to_nifti.siemens) parse_protocol() (in module dicomifier.dicom_to_nifti.siemens)

R

ReconstructionContext (class in dicomifier.bruker_to_dicom.convert)

S

SeriesContext (class in dicomifier.dicom_to_nifti.convert) shape (dicomifier.bruker.Field property) siemens_coil_getter() (in module dicomifier.dicom_to_nifti.stacks) SiemensXAClassic2DSeriesFinder (class in dicomifier.dicom_to_nifti.series)

sort() (in module dicomifier.dicom_to_nifti.stacks) source command line option, [1], [2], [3], [4] split_series() (in module dicomifier.dicom_to_nifti.series)

T

to_2d() (in module dicomifier.bruker_to_dicom.convert)

to_fsl() (in module dicomifier.nifti.diffusion) to_mrtrix() (in module dicomifier.nifti.diffusion)

V

value (dicomifier.bruker.Field property) (dicomifier.bruker.Field.Item property)

W

write_nifti() (in module dicomifier.dicom_to_nifti.io)