dicomifier.bruker_to_dicom.convert#

class dicomifier.bruker_to_dicom.convert.ReconstructionContext(path)#

Add reconstruction context to logger.

filter(record)#

Determine if the specified record is to be logged.

Returns True if the record should be logged, or False otherwise. If deemed appropriate, the record may be modified in-place.

dicomifier.bruker_to_dicom.convert.convert_directory(source, dicomdir, multiframe, writer)#

Convert a Bruker directory to DICOM and write the files.

Parameters:

  • source – source directory

  • dicomdir – whether to create a DICOMDIR

  • multiframe – whether to create multi-frame DICOM objects

  • writer – writer object from the io module

dicomifier.bruker_to_dicom.convert.convert_element(bruker_data_set, dicom_data_set, bruker_name, dicom_name, type_, getter, frame_index, generator, vr_finder)#

Convert a Bruker element to a DICOM element.

Parameters:

  • bruker_data_set – source Bruker data set

  • dicom_data_set – destination DICOM data set

  • bruker_name – Bruker name of the element

  • dicom_name – DICOM name of the element

  • type – DICOM type of the element (PS 3.5, 7.4)

  • getter – function returning the value using the Bruker data set, the generator and the frame index or None (direct access)

  • frame_index – index in frame group

  • generator – FrameIndexGenerator associated with the Bruker data set

  • vr_finder – function returning the DICOM VR from the dicom_name

dicomifier.bruker_to_dicom.convert.convert_module(bruker_data_set, dicom_data_set, module, frame_index, generator, vr_finder)#

Convert a DICOM module..

Parameters:

  • bruker_data_set – source Bruker data set

  • dicom_data_set – destination DICOM data set

  • module – sequence of 4-element tuples describing the conversions (Bruker name, DICOM name, DICOM type, getter)

  • frame_index – index in a frame group

  • generator – object that will manage the frame_index

  • vr_finder – function to find the VR knowing only the dicom_name

dicomifier.bruker_to_dicom.convert.convert_reconstruction(data_set, iod_converter, writer)#

Convert and save a single reconstruction.

Parameters:

  • iod_converter – conversion function

  • writer – writer object from the io module

dicomifier.bruker_to_dicom.convert.to_2d(data_set)#

Convert the Bruker data set from 3D to 2D.