to-dicom#

Convert Bruker data to DICOM (aliases: dicom, dcm).

Usage:

dicomifier to-dicom [options] source [source ...] destination

Arguments#

source#

Directories to scan for convertible data. This can be a top-level Bruker directory, or a sub-directory containing a single experiment or reconstruction.

destination#

Output directory

Options#

--dicomdir, -d#

Creates a DICOMDIR in the destination directory

--layout <layout>, -l <layout>#

Layout of the DICOM files on the disk, among

  • flat: all files are stored in the destination directory

  • nested: files are stored using a subject/study/series hierarchy in the destination directory (default)

--multiframe, -m#

Save multiframe DICOM files (one file per series) instead of the classic single-frame DICOM files (one file per slice)

--transfer-syntax <syntax>, -t <syntax>#

Transfer syntax of the output files, among

  • ImplicitVRLittleEndian (default)

  • ExplicitVRLittleEndian

-v <level>, --verbose <level>#

Verbosity level (warning, info, or debug)