Commands#
Dicomifier has a single command line executable, called dicomifier
, which accepts several commands:
List convertible data in a directory:
dicomifier list my_directory
Search for DICOM data matching the supplied search terms:
dicomifier search -m PatientName="Doe^*" dicom_directory
Convert Bruker data to DICOM:
dicomifier to-dicom bruker_directory dicom_directory
Convert Bruker or DICOM data to NIfTI+JSON:
dicomifier to-nifti bruker_or_dicom_directory nifti_directory
Extract diffusion data from NIfTI+JSON:
dicomifier diffusion-scheme meta_data_file mrtrix diffusion.scheme
ordicomifier diffusion-scheme meta_data_file fsl diffusion.bvecs diffusion.bvals
To list all available commands, run dicomifier --help
; to get help about a specific command, run dicomifier some-command --help
.