dicomifier.dicom_to_nifti.io#

dicomifier.dicom_to_nifti.io.get_dicomdir_files(path)#

Return the list of files indexed in a DICOMDIR file.

dicomifier.dicom_to_nifti.io.get_files(paths)#

Return the DICOM files found in the paths. Each path can be a single file, a directory (scanned recursively), or a DICOMDIR file.

dicomifier.dicom_to_nifti.io.get_series_directory(meta_data)#

Return the directory associated with the patient, study and series of the NIfTI meta-data.

dicomifier.dicom_to_nifti.io.write_nifti(nifti_data, destination, zip, series_directory=None)#

Write the NIfTI image and meta-data in the given destination.

Parameters:

  • nifti_data – Pair of NIfTI image and meta-data

  • destination – Destination directory

  • zip – whether to zip the NIfTI files

  • series_directory – if provided, override the automated series-based output directory name