dicomifier.dicom_to_nifti.convert#

class dicomifier.dicom_to_nifti.convert.SeriesContext(data_set)#

Add series context to logger.

filter(record)#

Determine if the specified record is to be logged.

Returns True if the record should be logged, or False otherwise. If deemed appropriate, the record may be modified in-place.

dicomifier.dicom_to_nifti.convert.convert_paths(paths, destination, zip, dtype=None, extra_splitters=None)#

Convert the DICOM files found in a collection of paths (files, directories, or DICOMDIR) and save the result in the given destination.

Parameters:

  • paths – Collection of paths to scan for DICOM files

  • destination – Destination directory

  • zip – whether to zip the NIfTI files

  • dtype – if not None, force the dtype of the result image

  • extra_splitters – additional splitters to be used when building stacks

dicomifier.dicom_to_nifti.convert.convert_series(series_files, dtype=None, finder=None, extra_splitters=None)#

Return the NIfTI image and meta-data from the files containing a single series.

Parameters:

  • dtype – if not None, force the dtype of the result image

  • finder – if not None, series finder object to overwrite the Series Instance UID

  • extra_splitters – additional splitters to be used when building stacks

dicomifier.dicom_to_nifti.convert.convert_series_data_sets(data_sets, dtype=None, extra_splitters=None)#

Convert a list of dicom data sets into Nfiti

Parameters:

  • data_sets – list of dicom data sets to convert

  • dtype – if not None, force the dtype of the result image

  • extra_splitters – additional splitters to be used when building stacks

dicomifier.dicom_to_nifti.convert.merge_images_and_meta_data(images_and_meta_data)#

Merge the pixel and meta-data of geometrically coherent images.