Commands#

Dicomifier has a single command line executable, called dicomifier, which accepts several commands:

  • List convertible data in a directory: dicomifier list my_directory

  • Search for DICOM data matching the supplied search terms: dicomifier search -m PatientName="Doe^*" dicom_directory

  • Convert Bruker data to DICOM: dicomifier to-dicom bruker_directory dicom_directory

  • Convert Bruker or DICOM data to NIfTI+JSON: dicomifier to-nifti bruker_or_dicom_directory nifti_directory

  • Extract diffusion data from NIfTI+JSON: dicomifier diffusion-scheme meta_data_file mrtrix diffusion.scheme or dicomifier diffusion-scheme meta_data_file fsl diffusion.bvecs diffusion.bvals

To list all available commands, run dicomifier --help; to get help about a specific command, run dicomifier some-command --help.

Available commands